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1

DNA bending and sequence-dependent backbone conformation : NMR and computer experiments

Rejadra P. Ojha, Madan M. Dhingra, Mukti H. Sarma, Masayuki Shibata, Margaret Farrar, Christopher J. Turner, Ramaswamy H. Sarma

Journal:

Year:

1999

Language:

english

File:

PDF, 1.81 MB

english, 1999

2

Determination of the solution structure of nucleic acid double helices using NOE difference NMR spectroscopy, chemical shift calculations, and computer modeling

Goutam Gupta, Mukti H. Sarma, Ramaswamy H. Sarma

Journal:

International Journal of Quantum Chemistry

Year:

1985

Language:

english

File:

PDF, 749 KB

english, 1985

3

DNA bending in solution: NMR studies on the structural roles of A/T tracts and the sequences at the junction

Goutam Gupta, Kimiko Umemoto, Mukti H. Sarma, Ramaswamy H. Sarma

Journal:

International Journal of Quantum Chemistry

Year:

1989

Language:

english

File:

PDF, 764 KB

english, 1989

4

DNA bending studied by MD and 2D NMR NOESY simulations: Role of the junction sequence between the A/T tracts

Jia Luo, Mukti H. Sarma, Goutam Gupta, Ramaswamy H. Sarma

Journal:

International Journal of Quantum Chemistry

Year:

1991

Language:

english

File:

PDF, 820 KB

english, 1991

5

Processing of RNA by cytoplasmic extract

Journal:

Molecular Biology Reports

Year:

1976

Language:

english

File:

PDF, 436 KB

english, 1976

6

A low molecular weight nuclear RNA from HeLa cells inhibits exogenous messenger RNA-dependent protein synthesis

Mukti H. Sarma, Nando K. Chatterjee

Journal:

Biochimica et Biophysica Acta (BBA) - Nucleic Acids and Protein Synthesis

Year:

1980

Language:

english

File:

PDF, 680 KB

english, 1980

7

Limited digestion of RNA polymerase from Escherichia coli by trypsin (effect of rifamycin and DNA on the integrity of sigma subunit)

Mukti H. Sarma, Roswitha G. Dorr, Ramaswamy H. Sarma

Journal:

Biochemical and Biophysical Research Communications

Year:

1982

Language:

english

File:

PDF, 1.71 MB

english, 1982

8

NMR study of self-paired parallel duplex of d(AAAAACCCCC) in solution

Jia Luo, Mukti H. Sarma, Ren-da Yuan, Ramaswamy H. Sarma

Journal:

Year:

1992

Language:

english

File:

PDF, 521 KB

english, 1992

9

Secondary structure in solution of two anti-HIV-1 hammerhead ribozymes as investigated by two-dimensional 1H 500 MHz NMR spectroscopy in water

Ramswamy H. Sarma, Mukti H. Sarma, Robert Rein, Masayuki Shibata, Robert S. Setlik, Rick L. Ornstein, A. Latif Kazim, Alfred Cairo, Thomas B. Tomasi

Journal:

Year:

1995

Language:

english

File:

PDF, 597 KB

english, 1995

10

GC rich DNA oligonucleotides with narrow minor groove width

Ramaswamy H. Sarma, Mukti H. Sarma, Linsen Dai, Kimiko Umemoto

Journal:

Year:

1997

Language:

english

File:

PDF, 688 KB

english, 1997

11

Inhibition of exogenous RNA-dependent protein synthesis by a low-molecular-weight RNA from nuclear ribonucleoprotein particles of adenovirus-infected HeLa cells

Mukti H. Sarma, Thaisa A. Beach, Nando K. Chatterjee

Journal:

Biochemical and Biophysical Research Communications

Year:

1978

Language:

english

File:

PDF, 413 KB

english, 1978

12

Valery (Chrom) Ivanov In memoriam

Frank-Kamenetskii, Maxim, Trifonov, Edward, Zhurkin, Victor, Danilov, Victor, Sarma, Mukti, Sarma, Ramaswamy

Journal:

Journal of Biomolecular Structure and Dynamics

Year:

2013

Language:

english

File:

PDF, 124 KB

english, 2013

13

Secondary structure of the hybrid poly(rA) · poly(dT) in solution: Studies involving NOE at 500 MHz and stereochemical modelling within the constraints of NOE data

Goutam Gupta, Mukti H. Sarma, Ramaswamy H. Sarma

Journal:

Journal of Molecular Biology

Year:

1985

Language:

english

File:

PDF, 696 KB

english, 1985

14

Quantitative structure of a complex between a minor-groove-specific drug and a bent DNA decamer duplex: use of 2D NMR data and NOESY constrained energy minimization

Sarma, Mukti H., Gupta, Goutam, Garcia, Angel E., Umemoto, Kimiko, Sarma, Ramaswamy H.

Journal:

Year:

1990

Language:

english

File:

PDF, 1.83 MB

english, 1990

15

Structure of a bent DNA: two-dimensional NMR studies on d(GAAAATTTTC)2

Sarma, Mukti H., Gupta, Goutam, Sarma, Ramaswamy H.

Journal:

Year:

1988

Language:

english

File:

PDF, 1.03 MB

english, 1988

16

Effect of the methyl group on DNA bending and curvature: structure of d(GA4U4C)2 in solution

Umemoto, Kimiko, Sarma, Mukti H., Gupta, Goutam, Sarma, Ramaswamy H.

Journal:

Year:

1990

Language:

english

File:

PDF, 1.64 MB

english, 1990

17

Systematic study of nuclear Overhauser effects vis-a-vis local helical parameters, sugar puckers, and glycosidic torsions in B DNA; insensitivity of NOE to local transitions in B DNA oligonucleotides due to internal structural compensations

Ul'yanov, N. B., Gorin, A. A., Zhurkin, V. B., Chen, Ban Chin, Sarma, Mukti H., Sarma, Ramaswamy H.

Journal:

Year:

1992

Language:

english

File:

PDF, 2.11 MB

english, 1992

18

DNA structure in which an adenine-cytosine mismatch pair forms an integral part of the double helix

Sarma, Mukti H., Gupta, Goutam, Sarma, Ramaswamy H., Bald, Rolf, Engelke, Ute, Oei, Shiao Li, Gessner, Reinhard, Erdmann, Volker A.

Journal:

Year:

1987

Language:

english

File:

PDF, 1.04 MB

english, 1987

19

Cancer Watch Establishes Web Site: The CANCER WATCH WWW Edition

Sarma, Mukti H.

Journal:

Journal of Biomolecular Structure and Dynamics

Year:

1997

Language:

english

File:

PDF, 52 KB

english, 1997

20

Structure and Dynamics of Netropsin-Poly(dA-dT)· Poly(dA-dT) Complex: 500 MHz 1 H NMR Studies

Gupta, Goutam, Sarma, Mukti H., Sarma, Ramaswamy H.

Journal:

Journal of Biomolecular Structure and Dynamics

Year:

1984

Language:

english

File:

PDF, 1.50 MB

english, 1984

21

Cancer Watch Establishes Web Site: The CANCER WATCH WWW Edition

Sarma, Mukti H.

Journal:

Journal of Biomolecular Structure and Dynamics

Year:

1997

Language:

english

File:

PDF, 53 KB

english, 1997

22

Cancer Watch Establishes Web Site The CANCER WATCH WWW Edition

Sarma, Mukti H.

Journal:

Journal of Biomolecular Structure and Dynamics

Year:

1999

Language:

english

File:

PDF, 56 KB

english, 1999

23

500-MHz proton NMR study of poly(dG).cntdot.poly(dC) in solution using one-dimensional nuclear Overhauser effect

Sarma, Mukti H., Gupta, Goutam, Sarma, Ramaswamy H.

Journal:

Year:

1986

Language:

english

File:

PDF, 746 KB

english, 1986

24

Structure and stability of a DNA triple helix in solution: NMR studies on d(T)6.cntdot.d(A)6.cntdot.d(T)6 and its complex with a minor groove binding drug

Umemoto, Kimiko, Sarma, Mukti H., Gupta, Goutam, Luo, Jia, Sarma, Ramaswamy H.

Journal:

Journal of the American Chemical Society

Year:

1990

Language:

english

File:

PDF, 828 KB

english, 1990

25

DNA hairpin structures in solution: 500-MHz two-dimensional proton NMR studies on d(CGCCGCAGC) and d(CGCCGTAGC)

Gupta, Goutam, Sarma, Mukti H., Sarma, Ramaswamy H., Bald, Rolf, Engelke, Ute, Oei, Shiao Li, Gessner, Reinhard, Erdmann, Volker A.

Journal:

Year:

1987

Language:

english

File:

PDF, 1.05 MB

english, 1987

26

Cancer Watch Establishes Web Site

Sarma, Mukti H.

Journal:

Journal of Biomolecular Structure and Dynamics

Year:

1997

Language:

english

File:

PDF, 52 KB

english, 1997

27

Cancer Watch Establishes Web Site: The CANCER WATCH WWW Edition

Sarma, Mukti H.

Journal:

Journal of Biomolecular Structure and Dynamics

Year:

1999

Language:

english

File:

PDF, 54 KB

english, 1999

28

DNA Bending and Sugar Switching

Kamath, Shantaram, Sarma, Mukti H., Zhurkin, Victor B., Turner, Christopher J., Sarma, Ramaswamy H.

Journal:

Journal of Biomolecular Structure and Dynamics

Year:

2000

Language:

english

File:

PDF, 246 KB

english, 2000

29

Structure, Motion, Interaction and Expression of Biological Macromolecules

Sarma, Ramaswamy H., Sarma, Mukti H.

Journal:

Journal of Biomolecular Structure and Dynamics

Year:

1998

Language:

english

File:

PDF, 5.00 MB

english, 1998

30

Structure, Motion, Interaction and Expression of Biological Macromolecules

Sarma, Ramaswamy H., Sarma, Mukti H.

Journal:

Journal of Biomolecular Structure and Dynamics

Year:

1998

Language:

english

File:

PDF, 6.00 MB

english, 1998

31

Cancer Watch Establishes Web Site: The CANCER WATCH WWW Edition

Sarma, Mukti H.

Journal:

Journal of Biomolecular Structure and Dynamics

Year:

1997

Language:

english

File:

PDF, 52 KB

english, 1997

32

Cancer Watch Establishes Web Site: The CANCER WATCH WWW Edition

Sarma, Mukti H.

Journal:

Journal of Biomolecular Structure and Dynamics

Year:

1999

Language:

english

File:

PDF, 52 KB

english, 1999

33

Structure of an Anti-HIV-1 Hammerhead Ribozyme Complex with a 17-mer DNA Substrate Analog of HIV-1 gag RNA and a Mechanism for the Cleavage Reaction: 750 MHz NMR and Computer Experiments

Ojha, Rajendra P., Dhingra, Madan M., Sarma, Mukti H., Myer, Yash P., Setlik, Robert F., Shibata, Masayuki, Kazim, A. Latif., Ornstein, Rick L., Rein, Robert, Turner, Christopher J., Sarma, Ramaswamy

Journal:

Journal of Biomolecular Structure and Dynamics

Year:

1997

Language:

english

File:

PDF, 10.82 MB

english, 1997

34

During B-Z Transition There is No Large Scale Breakage of Watson-Crick Base Pairs A Direct Demonstration Using 500 MHz 1 H NMR Spectroscopy

Sarma, Mukti H., Gupta, Goutam, Dhingra, M. M., Sarma, Ramaswamy H.

Journal:

Journal of Biomolecular Structure and Dynamics

Year:

1983

Language:

english

File:

PDF, 1.63 MB

english, 1983

35

Tetraplex Formation of d(GGGGGTTTTT): 1 H NMR Study in Solution

Sarma, Mukti H., Luo, Jia, Umemoto, Kimiko, Yuan, Ren-da, Sarma, Ramaswamy H.

Journal:

Journal of Biomolecular Structure and Dynamics

Year:

1992

Language:

english

File:

PDF, 1.09 MB

english, 1992

36

Solution Structure of Poly(dA-dT)· Poly(dA-dT) in Low and High Salt: A 500 MHz 1 H NMR Study Using One-Dimensional NOE

Sarma, Mukti H., Gupta, Goutam, Sarma, Ramaswamy H.

Journal:

Journal of Biomolecular Structure and Dynamics

Year:

1984

Language:

english

File:

PDF, 1.27 MB

english, 1984

37

Determination of Handedness of DNA Double Helices From NOE Difference Spectra: The Structure of Poly(dG-dC)•Poly(dG-dC) in Low Salt

Dhingra, M. M., Sarma, Mukti H., Gupta, Goutam, Sarma, Ramaswamy H.

Journal:

Journal of Biomolecular Structure and Dynamics

Year:

1983

Language:

english

File:

PDF, 535 KB

english, 1983

38

Cancer Watch Establishes Web Site: The CANCER WATCH WWW Edition

Sarma, Mukti H.

Journal:

Journal of Biomolecular Structure and Dynamics

Year:

1996

Language:

english

File:

PDF, 46 KB

english, 1996

39

Modeling of a Possible Conformational Change Associated With the Catalytic Mechanism in the Hammerhead Ribozyme

Setlik, Robert F., Shibata, Masayuki, Sarma, Ramaswamy H., Sarma, Mukti H., Kazim, A. Latif, Ornstein, Rick L., Tomasi, Thomas B., Rein, Robert

Journal:

Journal of Biomolecular Structure and Dynamics

Year:

1995

Language:

english

File:

PDF, 600 KB

english, 1995

40

Netropsin Specifically Recognizes One of the Two Conformationally Equivalent Strands of Poly (dA)·Poly (dT). One Dimensional NMR Study at 500 MHz Involving NOE Transfer Between Netropsin and DNA Protons

Sarma, Mukti H., Gupta, Goutam, Sarma, Ramaswamy H.

Journal:

Journal of Biomolecular Structure and Dynamics

Year:

1985

Language:

english

File:

PDF, 875 KB

english, 1985

41

Cancer Watch Establishes Web Site: The CANCER WATCH WWW Edition

Sarma, Mukti H.

Journal:

Journal of Biomolecular Structure and Dynamics

Year:

1996

Language:

english

File:

PDF, 47 KB

english, 1996

42

In Search of a Hoogsteen Base Paired DNA Duplex in Aqueous Solution

Sarma, Mukti H., Umemoto, Kimiko, Gupta, Goutam, Luo, Jia, Sarma, Ramaswamy H.

Journal:

Journal of Biomolecular Structure and Dynamics

Year:

1990

Language:

english

File:

PDF, 832 KB

english, 1990

43

Structure of Poly(dA)·Poly(dT) is not Identical to the AT Rich Regions of the Single Crystal Structure of CGCGAATT Br CGCG. The Consequence of this to Netropsin Binding to Poly(dA)·Poly(dT)

Sarma, Mukti H., Gupta, Goutam, Sarma, Ramaswamy H.

Journal:

Journal of Biomolecular Structure and Dynamics

Year:

1985

Language:

english

File:

PDF, 260 KB

english, 1985

44

Poly(dA-dT)•Poly(dA-dT) in Low Salt Appears to be a Left-Handed B-Helix Combined Use of Chemical Theory, Fiber Diffraction and NMR Spectroscopy

Gupta, Goutam, Sarma, Mukti H., Dhingra, M. M., Sarma, Ramaswamy H., Rajagopalan, Malini, Sasisekharan, V.

Journal:

Journal of Biomolecular Structure and Dynamics

Year:

1983

Language:

english

File:

PDF, 1020 KB

english, 1983

45

Untenability of the Heteronomous DNA Model for Poly(dA) · Poly(dT) in Solution. This DNA Adopts a Right-Handed B-DNA Duplex in Which the Two Strands are Conformationally Equivalent. A 500 MHz NMR Study Using One Dimensional NOE

Sarma, Mukti H., Gupta, Goutam, Sarma, Ramaswamy H.

Journal:

Journal of Biomolecular Structure and Dynamics

Year:

1985

Language:

english

File:

PDF, 1.18 MB

english, 1985

46

Stability and Motion of a Hairpin and the Corresponding Mismatched Duplex: A Theoretical Exploration Using Molecular Mechanics and Normal Mode Analysis of 2D NMR Results on d(GCCGCAGC)

Garcia, Angel E., Gupta, Goutam, Sarma, Mukti H., Sarma, Ramaswamy H.

Journal:

Journal of Biomolecular Structure and Dynamics

Year:

1988

Language:

english

File:

PDF, 902 KB

english, 1988

47

Decreased interstrand H2-H1' distance in the GC-rich part of the duplex d(CCTCAAACTCC).cntdot.d(GGAGTTTGAGG) in solution at low temperature: proton nuclear magnetic resonance investigation

Ulyanov, N. B., Sarma, Mukti H., Zhurkin, V. B., Sarma, Ramaswamy H.

Journal:

Year:

1993

Language:

english

File:

PDF, 1.65 MB

english, 1993

48

Cyclic nucleotide-independent protein kinases bound to cytoplasmic and nuclear polyribosomes in non-infected and adenovirus-infected HeLa cells

Sarma, Mukti H., Chatterjee, Nando K.

Journal:

Biochemical Journal

Year:

1980

Language:

english

File:

PDF, 2.14 MB

english, 1980